Wire QSWATPlusRefHAWQS and QSWATPlusProjHAWQS into database initialisation and validation by Copilot · Pull Request #1 · limnotrack/QSWATPlus

Copilot · 2026-03-25T23:51:13Z

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…xample data Co-authored-by: tadhg-moore <23136262+tadhg-moore@users.noreply.github.com> Agent-Logs-Url: https://github.com/limnotrack/QSWATPlus/sessions/bbb403e8-ecbf-40c2-a367-81298d591a8d

Co-authored-by: tadhg-moore <23136262+tadhg-moore@users.noreply.github.com> Agent-Logs-Url: https://github.com/limnotrack/QSWATPlus/sessions/bbb403e8-ecbf-40c2-a367-81298d591a8d

tadhg-moore · 2026-03-26T01:35:50Z

Can @copilot add visualisation functions to allow the user to inspect the outputs as spatial objects using the tmap R package, and also summary plots showing landuse, soils, and hru breakdown.

…compatibility checks Co-authored-by: tadhg-moore <23136262+tadhg-moore@users.noreply.github.com> Agent-Logs-Url: https://github.com/limnotrack/QSWATPlus/sessions/eb2274fe-4395-4d4e-840a-fd391d878047

…ase.R Co-authored-by: tadhg-moore <23136262+tadhg-moore@users.noreply.github.com> Agent-Logs-Url: https://github.com/limnotrack/QSWATPlus/sessions/eb2274fe-4395-4d4e-840a-fd391d878047

Copilot · 2026-03-26T01:55:19Z

Can @copilot add visualisation functions to allow the user to inspect the outputs as spatial objects using the tmap R package, and also summary plots showing landuse, soils, and hru br...

Added in commit bc49f51:

Spatial map functions using tmap (Suggests dependency):

qswat_plot_dem() — DEM elevation map
qswat_plot_landuse() — Land use classification with lookup labels
qswat_plot_soil() — Soil type with lookup labels
qswat_plot_streams() — Stream network overlaid on DEM
qswat_plot_watershed() — Subbasin boundaries

Summary plots using ggplot2 (Suggests dependency):

qswat_plot_landuse_summary() — Bar chart of land use area/percent
qswat_plot_soil_summary() — Bar chart of soil area/percent
qswat_plot_hru_summary() — Faceted land use/soil/slope breakdown, or stacked bar per subbasin with by_subbasin = TRUE

Both tmap and ggplot2 are in Suggests so the core package works without them, with clear error messages if missing. 14 new tests cover the visualization functions.

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cloud.r-project.org
- Triggering command: /usr/lib/R/bin/exec/R /usr/lib/R/bin/exec/R --no-restore --no-echo --args nextArgrQSWATPlusnextArg--no-build-vignettesnextArg--no-manual -pocketsphinx-en-us_0.8.0+real5porg.freedesktop.DBus.Properties.Get stall-Rt0rH4/922-r-cran-systemfistring:org.freedesktop.login1.Manager /usr/bin/tar stall-Rt0rH4/723rm p.ci plit tar -x l.service.wants p.ci /usr/bin/dpkg-deb .deb stall-Rt0rH4/736--norc /usr/bin/tar dpkg-deb (dns block)
- Triggering command: /usr/lib/R/bin/exec/R /usr/lib/R/bin/exec/R --no-restore --no-echo --args nextArgrQSWATPlusnextArg--no-build-vignettesnextArg--no-manual (dns block)

If you need me to access, download, or install something from one of these locations, you can either:

Configure Actions setup steps to set up my environment, which run before the firewall is enabled
Add the appropriate URLs or hosts to the custom allowlist in this repository's Copilot coding agent settings (admins only)

…utput Agent-Logs-Url: https://github.com/limnotrack/QSWATPlus/sessions/85fe8090-91f4-4da1-80de-530a9a3d23b0 Co-authored-by: tadhg-moore <23136262+tadhg-moore@users.noreply.github.com>

Agent-Logs-Url: https://github.com/limnotrack/QSWATPlus/sessions/85fe8090-91f4-4da1-80de-530a9a3d23b0 Co-authored-by: tadhg-moore <23136262+tadhg-moore@users.noreply.github.com>

…ers options to qswat_create_hrus Agent-Logs-Url: https://github.com/limnotrack/QSWATPlus/sessions/2d800782-b590-40e9-bf62-e1f6f198afeb Co-authored-by: tadhg-moore <23136262+tadhg-moore@users.noreply.github.com>

…sage Agent-Logs-Url: https://github.com/limnotrack/QSWATPlus/sessions/2d800782-b590-40e9-bf62-e1f6f198afeb Co-authored-by: tadhg-moore <23136262+tadhg-moore@users.noreply.github.com>

Agent-Logs-Url: https://github.com/limnotrack/QSWATPlus/sessions/a1dbc04a-0f6c-4ccd-951f-4ae977211e0b Co-authored-by: tadhg-moore <23136262+tadhg-moore@users.noreply.github.com>

…ithub.com/limnotrack/QSWATPlus into copilot/develop-r-package-for-qgis-plugin

… population Agent-Logs-Url: https://github.com/limnotrack/QSWATPlus/sessions/b7944146-d389-458f-8c67-111a1b2723ee Co-authored-by: tadhg-moore <23136262+tadhg-moore@users.noreply.github.com>

…comments Agent-Logs-Url: https://github.com/limnotrack/QSWATPlus/sessions/b7944146-d389-458f-8c67-111a1b2723ee Co-authored-by: tadhg-moore <23136262+tadhg-moore@users.noreply.github.com>

Agent-Logs-Url: https://github.com/limnotrack/QSWATPlus/sessions/b7944146-d389-458f-8c67-111a1b2723ee Co-authored-by: tadhg-moore <23136262+tadhg-moore@users.noreply.github.com>

…-in-r Implement qswat_populate_gwflow_gis() for GIS-dependent gwflow tables

…ithub.com/limnotrack/QSWATPlus into copilot/develop-r-package-for-qgis-plugin

…w tables"

…ow-tables-in-r Revert "Implement qswat_populate_gwflow_gis() for GIS-dependent gwflow tables"

Agent-Logs-Url: https://github.com/limnotrack/QSWATPlus/sessions/f90462f7-c1b6-4072-b624-748d2edf6868 Co-authored-by: tadhg-moore <23136262+tadhg-moore@users.noreply.github.com>

Integrate gwflow setup into qswat_run workflow

…ow-tables-in-r Revert 2 copilot/implement gwflow tables in r

…ithub.com/limnotrack/QSWATPlus into copilot/develop-r-package-for-qgis-plugin

Agent-Logs-Url: https://github.com/limnotrack/QSWATPlus/sessions/06f8b361-bbd0-4826-8607-02cc7e9db74c Co-authored-by: tadhg-moore <23136262+tadhg-moore@users.noreply.github.com>

…rucell) in qswat_setup_gwflow Agent-Logs-Url: https://github.com/limnotrack/QSWATPlus/sessions/ea09f8d7-35da-45fc-8a17-768308f7ddc5 Co-authored-by: tadhg-moore <23136262+tadhg-moore@users.noreply.github.com>

…t, recharge condition) Agent-Logs-Url: https://github.com/limnotrack/QSWATPlus/sessions/ea09f8d7-35da-45fc-8a17-768308f7ddc5 Co-authored-by: tadhg-moore <23136262+tadhg-moore@users.noreply.github.com>

…base-function Copilot/update qswat check database function

Initial plan

9272d10

Copilot AI assigned Copilot and tadhg-moore Mar 25, 2026

Copilot started work on behalf of tadhg-moore March 25, 2026 23:51 View session

Copilot AI and others added 2 commits March 26, 2026 00:24

Add rQSWATPlus R package with core functions, tests, vignettes, and e…

f633810

…xample data Co-authored-by: tadhg-moore <23136262+tadhg-moore@users.noreply.github.com> Agent-Logs-Url: https://github.com/limnotrack/QSWATPlus/sessions/bbb403e8-ecbf-40c2-a367-81298d591a8d

Fix SpatRaster typo in data-requirements vignette

ca9c55e

Co-authored-by: tadhg-moore <23136262+tadhg-moore@users.noreply.github.com> Agent-Logs-Url: https://github.com/limnotrack/QSWATPlus/sessions/bbb403e8-ecbf-40c2-a367-81298d591a8d

Copilot AI changed the title ~~[WIP] Add R package for QGIS plugin replication with vignettes~~ Add rQSWATPlus R package replicating QSWATPlus QGIS plugin workflow Mar 26, 2026

Copilot AI requested a review from tadhg-moore March 26, 2026 00:26

Copilot finished work on behalf of tadhg-moore March 26, 2026 00:26

tadhg-moore added 7 commits March 26, 2026 14:00

update roxygen

fce90eb

Ad deps and fix traudem bugs

8c8dafc

Switch quiet to TRUE

98e457f

Add writing data

0a73b49

Work with outlet file

41ba438

ad test with outlet

3d79e6a

swith on eal and set quiet = T

313db75

Copilot started work on behalf of tadhg-moore March 26, 2026 01:35 View session

Copilot AI and others added 2 commits March 26, 2026 01:53

Add visualization functions (tmap/ggplot2) and SWAT+ Editor database …

499d18f

…compatibility checks Co-authored-by: tadhg-moore <23136262+tadhg-moore@users.noreply.github.com> Agent-Logs-Url: https://github.com/limnotrack/QSWATPlus/sessions/eb2274fe-4395-4d4e-840a-fd391d878047

Address code review: add comments for magic numbers in validate_datab…

bc49f51

…ase.R Co-authored-by: tadhg-moore <23136262+tadhg-moore@users.noreply.github.com> Agent-Logs-Url: https://github.com/limnotrack/QSWATPlus/sessions/eb2274fe-4395-4d4e-840a-fd391d878047

Copilot finished work on behalf of tadhg-moore March 26, 2026 01:56

tadhg-moore added 4 commits March 27, 2026 08:26

Add catch for print

f92202f

Update to latest version of tmap

1abff5a

Improve test

b31357e

Ad db file to projet object

da849dd

Copilot started work on behalf of tadhg-moore March 26, 2026 22:43 View session

Copilot AI and others added 2 commits March 26, 2026 22:57

Add all SWAT+ Editor required tables and project_config to database o…

28dc643

…utput Agent-Logs-Url: https://github.com/limnotrack/QSWATPlus/sessions/85fe8090-91f4-4da1-80de-530a9a3d23b0 Co-authored-by: tadhg-moore <23136262+tadhg-moore@users.noreply.github.com>

Address code review: fix slope label fallback, add LSU reference comment

9ab0fbd

Agent-Logs-Url: https://github.com/limnotrack/QSWATPlus/sessions/85fe8090-91f4-4da1-80de-530a9a3d23b0 Co-authored-by: tadhg-moore <23136262+tadhg-moore@users.noreply.github.com>

Copilot AI changed the title ~~Add rQSWATPlus R package replicating QSWATPlus QGIS plugin workflow~~ Match database output to QSWATPlusProj.sqlite template for SWAT+ Editor compatibility Mar 26, 2026

Remove dep

396d1b8

Copilot started work on behalf of tadhg-moore April 8, 2026 02:42 View session

Copilot AI and others added 2 commits April 8, 2026 02:51

Add hru_method, threshold_type, area_threshold, use_gwflow, use_aquif…

1fc5ff8

…ers options to qswat_create_hrus Agent-Logs-Url: https://github.com/limnotrack/QSWATPlus/sessions/2d800782-b590-40e9-bf62-e1f6f198afeb Co-authored-by: tadhg-moore <23136262+tadhg-moore@users.noreply.github.com>

Address code review: add filter_area validation and improve error mes…

5e54bdf

…sage Agent-Logs-Url: https://github.com/limnotrack/QSWATPlus/sessions/2d800782-b590-40e9-bf62-e1f6f198afeb Co-authored-by: tadhg-moore <23136262+tadhg-moore@users.noreply.github.com>

Copilot finished work on behalf of tadhg-moore April 8, 2026 02:53

Copilot started work on behalf of tadhg-moore April 8, 2026 03:32 View session

Add hru_sf/lsu_sf output and qswat_plot_hrus/lsus/overview

1c93cfe

Agent-Logs-Url: https://github.com/limnotrack/QSWATPlus/sessions/a1dbc04a-0f6c-4ccd-951f-4ae977211e0b Co-authored-by: tadhg-moore <23136262+tadhg-moore@users.noreply.github.com>

Copilot finished work on behalf of tadhg-moore April 8, 2026 03:48

tadhg-moore and others added 22 commits April 8, 2026 16:07

set defaults

a23c5d9

Merge branch 'copilot/develop-r-package-for-qgis-plugin' of https://g…

c2cf745

…ithub.com/limnotrack/QSWATPlus into copilot/develop-r-package-for-qgis-plugin

Add docs

88cd83c

Implement qswat_populate_gwflow_gis() with GIS-dependent gwflow table…

6532edd

… population Agent-Logs-Url: https://github.com/limnotrack/QSWATPlus/sessions/b7944146-d389-458f-8c67-111a1b2723ee Co-authored-by: tadhg-moore <23136262+tadhg-moore@users.noreply.github.com>

Address code review: fix test logic, optimize ID assignment, improve …

adf4c67

…comments Agent-Logs-Url: https://github.com/limnotrack/QSWATPlus/sessions/b7944146-d389-458f-8c67-111a1b2723ee Co-authored-by: tadhg-moore <23136262+tadhg-moore@users.noreply.github.com>

Final polish: improved comments, add recharge=1 test case

a0d99ab

Agent-Logs-Url: https://github.com/limnotrack/QSWATPlus/sessions/b7944146-d389-458f-8c67-111a1b2723ee Co-authored-by: tadhg-moore <23136262+tadhg-moore@users.noreply.github.com>

Merge pull request #2 from limnotrack/copilot/implement-gwflow-tables…

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…-in-r Implement qswat_populate_gwflow_gis() for GIS-dependent gwflow tables

Check tables

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Merge branch 'copilot/develop-r-package-for-qgis-plugin' of https://g…

f541c0a

…ithub.com/limnotrack/QSWATPlus into copilot/develop-r-package-for-qgis-plugin

Revert "Implement qswat_populate_gwflow_gis() for GIS-dependent gwflo…

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…w tables"

Merge pull request #3 from limnotrack/revert-2-copilot/implement-gwfl…

10b6d7c

…ow-tables-in-r Revert "Implement qswat_populate_gwflow_gis() for GIS-dependent gwflow tables"

feat: integrate gwflow functions into qswat_run workflow

ca4615a

Agent-Logs-Url: https://github.com/limnotrack/QSWATPlus/sessions/f90462f7-c1b6-4072-b624-748d2edf6868 Co-authored-by: tadhg-moore <23136262+tadhg-moore@users.noreply.github.com>

Merge pull request #4 from limnotrack/copilot/integrate-gwflow-functions

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Integrate gwflow setup into qswat_run workflow

Merge pull request #5 from limnotrack/revert-2-copilot/implement-gwfl…

8b4ef57

…ow-tables-in-r Revert 2 copilot/implement gwflow tables in r

Merge branch 'copilot/develop-r-package-for-qgis-plugin' of https://g…

42ba6ee

…ithub.com/limnotrack/QSWATPlus into copilot/develop-r-package-for-qgis-plugin

feat: add gwflow validation checks to qswat_check_database

f3a51d2

Agent-Logs-Url: https://github.com/limnotrack/QSWATPlus/sessions/06f8b361-bbd0-4826-8607-02cc7e9db74c Co-authored-by: tadhg-moore <23136262+tadhg-moore@users.noreply.github.com>

refactor: improve gwflow check robustness and test comments

a7295d7

Agent-Logs-Url: https://github.com/limnotrack/QSWATPlus/sessions/06f8b361-bbd0-4826-8607-02cc7e9db74c Co-authored-by: tadhg-moore <23136262+tadhg-moore@users.noreply.github.com>

Remove test

aaa72c1

feat: populate gwflow spatial tables (zone, grid, rivcell, lsucell, h…

6d578ee

…rucell) in qswat_setup_gwflow Agent-Logs-Url: https://github.com/limnotrack/QSWATPlus/sessions/ea09f8d7-35da-45fc-8a17-768308f7ddc5 Co-authored-by: tadhg-moore <23136262+tadhg-moore@users.noreply.github.com>

fix: address code review comments (thickness fallback, GLHYMPS commen…

d5f5d8f

…t, recharge condition) Agent-Logs-Url: https://github.com/limnotrack/QSWATPlus/sessions/ea09f8d7-35da-45fc-8a17-768308f7ddc5 Co-authored-by: tadhg-moore <23136262+tadhg-moore@users.noreply.github.com>

Update docs

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Merge pull request #7 from limnotrack/copilot/update-qswat-check-data…

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…base-function Copilot/update qswat check database function

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Wire QSWATPlusRefHAWQS and QSWATPlusProjHAWQS into database initialisation and validation#1

Wire QSWATPlusRefHAWQS and QSWATPlusProjHAWQS into database initialisation and validation#1
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Copilot AI commented Mar 25, 2026 •

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